Anatomy books

Saturday, March 6, 2021

Mossy fiber of cerebellum

Mossy fiber of cerebellum 

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They are the termical fibers of all other cerebellar afferent tract

One mossy fiber makes synaptic contact with 1000 purkinje neuron through granule cells of cerebellum

Mossy fiber arises from many sources

·         cerebral cortex ( largest),

·         the vestibular nerve and nuclei

·         the spinal cord ,

·         the reticular formation  

            feedback from deep cerebellar nuclei

Mossy fibers from the vestibular ganglion are the first mossy fibers to arrive in the cerebellum

They terminate in the granular layer of the cortex within the glomeruli

Axons of mossy fiber enter the cerebellum via the superior , middle and inferior cerebellar peduncles

They serve as inhibitory interneuron , they influence the degree of purkinje cell excitation

They  modify muscle activity through the motor control areas of the brain stem and cerebral cortex

Depending on the source of the mossy fibers, their termination within the cerebellum can be predominantly ipsilateral or contralateral and is restricted to particular lobules.

Keratan sulfate proteoglycan phosphacan regulates mossy fiber outgrowth and regeneration

Each mossy fiber can have up to 50 rosettes

unlike climbing fibers, mossy fibers DO NOT go directly to the Purkinje cell.

Mossy fiber > granule cell > purkinje fiber 


 

Climbing fiber of cerebellum

Climbing fiber of cerebellum 

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They are the terminal fibers of the olivocerebellar tracts

One climbing fiber makes synaptic contact with

1-10  purkinje neuron

Climbing fiber arises from

·         the inferior olivary nucleus located in the medulla oblongata

They passes through the granular layer and purkinje layer and terminate into  the molecular layer

These axons pass through the pons and enter the cerebellum via the inferior cerebellar peduncle

These fibers provide very powerful, excitatory input to the cerebellum which results in the generation of complex spike excitatory postsynaptic potential (EPSP) in Purkinje cells

 In this way climbing fibers (CFs) perform a central role in motor behaviors.

They influence 

·         Motor timing.

·         the control & coordination of movements

·         They contribute to sensory processing and cognitive tasks likely by encoding the timing of sensory input independently of attention or awareness

Climbing fibers cross the midline in the brain stem, enter the cerebellum through the inferior cerebellar peduncle, and terminate contralaterally within the cerebellum.

In the central nervous system, these fibers are able to undergo remarkable regenerative modifications in response to injuries, being able to generate new branches by sprouting to innervate surrounding Purkinje cells if these lose their CF innervation.

This kind of injury-induced sprouting has been shown to need the growth associated protein GAP-43

Climbing fiber cannot have rosettes

A single purkinje neuron makes synaptic contact with only one climbing fiber

Climbing fiber > purkinje fiber 


 

Tuesday, January 5, 2021

Short discussion about autosome

 

Autosome

An autosome is any of the numbered chromosomes, as opposed to the sex chromosomes. Humans have 22 pairs of autosomes and one pair of sex chromosomes (the X and Y). Autosomes are numbered roughly in relation to their sizes. That is, Chromosome 1 has approximately 2,800 genes, while chromosome 22 has approximately 750 genes.

An autosome is any chromosome that is not a sex chromosome (an allosome).

 The members of an autosome pair in a diploid cell have the same morphology, unlike those in allosome pairs which may have different structures. The DNA in autosomes is collectively known as atDNA or auDNA.

For example, humans have a diploid genome that usually contains 22 pairs of autosomes and one allosome pair (46 chromosomes total). The autosome pairs are labeled with numbers (1–22 in humans) roughly in order of their sizes in base pairs, while allosomes are labelled with their letters. By contrast, the allosome pair consists of two X chromosomes in females or one X and one Y chromosome in males. Unusual combinations of XYY, XXY, XXX, XXXX, XXXXX or XXYY, among other allosome combinations, are known to occur and usually cause developmental abnormalities.

Autosomes still contain sexual determination genes even though they are not sex chromosomes. For example, the SRY gene on the Y chromosome encodes the transcription factor TDF and is vital for male sex determination during development. TDF functions by activating the SOX9 gene on chromosome 17, so mutations of the SOX9 gene can cause humans with an ordinary Y chromosome to develop as females.

All human autosomes have been identified and mapped by extracting the chromosomes from a cell arrested in metaphase or prometaphase and then staining them with a type of dye (most commonly, Giemsa). These chromosomes are typically viewed as karyograms for easy comparison. Clinical geneticists can compare the karyogram of an individual to a reference karyogram to discover the cytogenetic basis of certain phenotypes. For example, the karyogram of someone with Patau Syndrome would show that they possess three copies of chromosome 13. Karyograms and staining techniques can only detect large-scale disruptions to chromosomes—chromosomal aberrations

Autosomal genetic disorders

Autosomal genetic disorders can arise due to a number of causes, some of the most common being nondisjunction in parental germ cells or Mendelian inheritance of deleterious alleles from parents. Autosomal genetic disorders which exhibit Mendelian inheritance can be inherited either in an autosomal dominant or recessive fashion

 These disorders manifest in and are passed on by either sex with equal frequency

 Autosomal dominant disorders are often present in both parent and child, as the child needs to inherit only one copy of the deleterious allele to manifest the disease. Autosomal recessive diseases, however, require two copies of the deleterious allele for the disease to manifest. Because it is possible to possess one copy of a deleterious allele without presenting a disease phenotype, two phenotypically normal parents can have a child with the disease if both parents are carriers (also known as heterozygotes) for the condition.

Autosomal aneuploidy can also result in disease conditions. Aneuploidy of autosomes is not well tolerated and usually results in miscarriage of the developing fetus. Fetuses with aneuploidy of gene-rich chromosomes—such as chromosome 1—never survive to term and fetuses with aneuploidy of gene-poor chromosomes—such as chromosome 21— are still miscarried over 23% of the time Possessing a single copy of an autosome (known as a monosomy) is nearly always incompatible with life, though very rarely some monosomies can survive past birth. Having three copies of an autosome (known as a trisomy) is far more compatible with life, however. A common example is Down syndrome, which is caused by possessing three copies of chromosome 21 instead of the usual two

Partial aneuploidy can also occur as a result of unbalanced translocations during meiosis Deletions of part of a chromosome cause partial monosomies, while duplications can cause partial trisomies. If the duplication or deletion is large enough, it can be discovered by analyzing a karyogram of the individual. Autosomal translocations can be responsible for a number of diseases, ranging from cancer to schizophrenia

 Unlike single gene disorders, diseases caused by aneuploidy are the result of improper gene dosage, not nonfunctional gene product smaller than a few million base pairs generally cannot be seen on a karyogram

An autosome is one of the 22 numbered pairs of chromosomes that most of us carry in almost all of the cells of our body. We actually have a total of 23 pairs of chromosomes in these cells, for a total of 46 chromosomes, but two of those are referred to by letter rather than by number and are called sex chromosomes rather than autosomes, since they--that is the X and Y chromosome--help determine what sex, or gender, we are. The 22 pairs of autosomes are referred to by number basically in inverse correlation with their size. That is, Chromosome 1, with the smallest number, is actually the largest chromosome. It has almost 3,000 genes on it. And we go down to the smallest chromosomes, the ones with the largest numbers. You think that would be Chromosome 22, since we have Chromosomes 1 through 22, which only has about 750 genes, but in fact Chromosome number 22 is not the smallest of the autosomes. We thought it was when it was first described, so that's how it got named 22. It turns out that Chromosome 21 is actually a little bit smaller than Chromosome 22.

 

Monday, January 4, 2021

Transcription

What is transcription?


Transcription is the synthesis of any type of complimentary RNA from a DNA template: note, several types of RNA can be encoded by a DNA strand [see DNA vs. RNA list]. Here, we focus specifically on transcription that leads to pre-mRNA, mRNA and eventually proteins. 

In the process of gene expression, transcription involves the production of messenger RNA (mRNA) from a DNA template. It takes place in the nucleus of a cell and is catalyzed by the enzyme RNA polymerase II.

RNA polymerase  All eukaryotes have three different types of RNA polymerase

RNA polymerase I transcribes rRNA genes

RNA polymerase II transcribes mRNA, miRNA, snRNA, and snRNA genes

RNA polymerase III transcribes an array of RNA genes, including but not limited to tRNA and 5S rRNA gene


 

 

 

 

 

The steps of transcription


The process of transcription entails several steps: 


1. Initiation


The first step of transcription to form mRNA involves RNA polymerase II binding to a promoter region  just upstream of the gene that is to be transcribed. Promoters are often classified as strong or weak based on their effects on transcription rates and thus gene expression. Transcription factors are proteins that help to position RNA polymerase II and assist in the breaking of the hydrogen bonds in the DNA helix. 3

2. Elongation


RNA polymerase II breaks the hydrogen bonds connecting two strands of DNA in the double helix. The enzyme then uses the single DNA strand as a template to build an RNA strand in the 5' to 3' direction, adding each complementary nucleotide to the 3' end of the strand. In RNA, the nucleotide thymine is replaced by the nucleotide uracil.


What do we mean by 5' and 3'? This refers to the carbon numbers in DNA and RNA's backbone. The 5' carbon ribose ring frequently has a phosphate group attached, and the 3' carbon end has a hydroxyl (-OH) group attached. The asymmetry gives the DNA and RNA strands a "direction

The DNA strand moves through the RNA polymerase II enzyme. In the region behind where the nucleotides are being added to form the pre-mRNA strand, the DNA helix re-forms. This means that the pre-mRNA produced is eventually released from the DNA template a single strand. 

3. Termination


Termination marks the end of RNA polymerase II adding nucleotides to the pre-mRNA strand and the release of the pre-mRNA. Despite extensive research, there is still ambiguity surrounding the precise physiological cause of termination - several mechanisms are outlined in this review paper .

From pre-mRNA to mRNA


Eukaryotic pre-mRNAs must go through several additional processing steps before translation can occur. Firstly, they have a 5' cap added and a 3' poly-A-tail added to protect against transcript degradation.

Many eukaryotic pre-mRNAs are subject to splicing. Here, the non-coding sections of the pre-mRNA (introns) are cut out, and the coding sections (the exons) are effectively glued back together.

Schematic showing pre-mRNA undergoing splicing to form mature mRNA.  

Alternative splicing may also take place, whereby exons or noncoding regions within the pre-Mrna transcript are joined or skipped, resulting in multiple mRNAs being encoded by a single gene.

After these modifications have taken place, the resulting strand is known as mature mRNA. This mature mRNA is then able to leave the nucleus and enter the cell cytoplasm where translation takes place. 

 

Wednesday, November 11, 2020

The dorsal column–medial lemniscus pathway

The dorsal column–medial lemniscus pathway (DCML) (also known as the posterior column-medial lemniscus pathway, PCML) is a sensory pathway of the central nervous system that conveys sensations of fine touch, vibration, two-point discrimination, and proprioception(position) from the skin and joints. It transmits information from the body to the primary somatosensory cortex in the postcentral gyrus of the parietal lobe of the brain.

 The pathway receives information from sensory receptors (missner’s corpuscle, pacinian corpuscle etc.) throughout the body, and carries this in nerve tracts in the white matter of the dorsal columns of the spinal cord to the medulla, where it is continued in the medial lemniscuses, on to the thalamus and relayed from there through the internal capsule and transmitted to the somatosensory cortex.

The name dorsal-column medial lemniscus comes from the two structures that carry the sensory information: the dorsal columns of the spinal cord, and the medial lemniscus in the brainstem.

There are three groupings of neurons that are involved in the pathway: first-order neurons, second-order neurons, and third-order neurons.

 The first-order neurons are sensory neurons located in the dorsal root ganglia, that send their afferent fibers through the two dorsal columns – the gracile fasciculus, or gracile tract, and the cuneate fasciculus, or cuneate tract. The first-order axons make contact with second-order neurons of the dorsal column nuclei (the gracile nucleus and the cuneate nucleus) in the lower medulla.

The second-order neurons send their axons to the thalamus.

The third-order neurons are in the ventral nuclear group in the thalamus and fibres from these ascend to the postcentral gyrus.

Sensory information from the upper half of the body is received at the cervical level of the spinal cord and carried in the cuneate tract, and information from the lower body is received at the lumbar level and carried in the gracile tract. The gracile tract is medial to the more lateral cuneate tract.

The axons of second-order neurons of the gracile and cuneate nuclei are known as the internal arcuate fibers and when they cross over the midline, at the sensory decussation in the medulla, they form the medial lemniscus which connects with thalamus; the axons synapse on neurons in the ventral nuclear group which then send axons to the postcentral gyrus in the parietal lobe. All of the axons in the DCML pathway are rapidly conducting, large, myelinated fibers.

 

Tuesday, November 10, 2020

Lateral spinothalamic tract

 

The lateral spinothalamic tract, also known as the lateral spinothalamic fasciculus, is an ascending pathway located anterolaterally within the peripheral white matter of the spinal cord. It is primarily responsible for transmitting pain and temperature as well as coarse touch. 

The anterior spinothalamic tract (discussed separately), in contrast, primarily transmits coarse touch and pressure. 

First-order neurons, whose cell bodies are in the dorsal root ganglion and whose axons extend from peripheral receptors, enter the cord via dorsal nerve roots. 

First-order neurons synapse with second-order neurons whose bodies are located in the ipsilateral substantia gelatinosa of dorsal horn of the spinal cord.

The lateral spinothalamic tract then ascends in the lateral funiculus, just medial to the ventral spinocerebellar tract. Fibers of this tract are somatotopically organized for their entire course.

Upon reaching the brainstem, the lateral and anterior spinothalamic tracts combine to form the spinal lemniscus, which runs lateral to the medial lemniscus

 The spinal lemniscus terminates in the ventral posterior nucleus of the thalamus. Here, it synapses with third-order neurons, which project to the primary somatosensory area on the ipsilateral side of the cerebral cortex.

Lesion : 


Contra-lateral loss of pain & thermal sensibilities below the level of the lesion

Unable to sense pin prick or recognize hot or cold objects